Sunday, November 5, 2017

In the South Pacific for some Ichthyology


In late September my PhD student Bill Ludt and I traveled to the beautiful island of Tahiti to attend the 10th Indo Pacific Fish Conference. This meeting takes place every four years and I have been anticipating this trip since Bill and I went to the last meeting in Okinawa in 2013. I also knew that I couldn’t go all this way not to collect fishes. As with other conferences in remote locales, and most field trips, it took a while to get permits; we were lucky to get them a day before our planned travel began (even though Bill had been working on them for more than a year).

Also joining us for part of the trip was LSU Biology professor Brant Faircloth. Brant and I submitted a proposal to run a symposium on fish systematics focusing on ultraconserved elements. Our session ultimately became part of a half day symposium called ‘Genes to Genomes: Forging ahead in the study of marine evolution” which we were happy to help organize. (Special thanks to Dr. Michelle Gaither who was the lead organizer and did all the heavy lifting.)

Soon after arriving we knew we were in paradise - an expensive French paradise. My French is passable, but most of the locals we met also spoke English as well their local Polynesian dialects. I always wanted to come to Tahiti, not so much for its fishes or the beautiful teal-colored water, but because I loved the history of Captains Cook and Bligh in this region; and because of films like Marlon Brando’s Mutiny on the Bounty.

We went to the central fish market in Papeete around 5am the first few mornings to see what we could get. We made nice collections of local wrasses, goatfish, and unicornfish among other colorful, if odd-looking, species. At the local grocery store we did come across a large specimen of an Opah, or “Moonfish” which gained some notoriety recently as being “warm blooded” – although some ichthyologists remain unconvinced. Sadly the specimen was too big to collect, and already had it’s gills removed.

Opah at market (left), butterflyfish (top), and unicornfish.
We also traveled to the island of Moorea, which is about a 45min ferry ride from Tahiti. This island is home to, among other things, the Gump Research Station run by UC Berkeley. The Gump helped us get our permits but we were unfortunately unable to collect on Moorea. We had to settle for a lovely day snorkeling in crystal clear water surrounded by lush green mountains.

The conference started a few days after our arrival, and it had about 500 attendees from around the world. Bill, Brant and I all spoke in the first session of the first day after the plenaries. The Indo Pacific Fish Conference is one of my favorites because I get to see many of the European, Asian and African colleagues I often don’t see at conferences in North or South America. Bill and I started several important collaborations that hopefully will make for some fruitful publications over the next few months and years.

Bill, Brant and I in Cook Bay, Moorea; Bill on stage presenting his talk.
Although we didn’t hit the markets again during the meeting, I did get to collect some introduced guppies. The extent of my freshwater fieldwork was putting a bag down into a sewer off the main road in Tahiti and letting it fill with water then pulling the bag out of the water to find that 50 individual guppies had swam into the bag. Many of these specimens were mailed off to a colleague studying the introduction of guppies around the world. He was very happy to get individuals from this distant and isolated population.

            I’ll spare you more details about the fish conference and swimming with humpbacks (as I did) and tiger sharks (as Bill did) and such, but rest assured this was no vacation (although it obviously wasn’t all work either). The conference was a great opportunity to talk about our work, including one collaboration that recently yielded the cover of Systematic Biology (Chakrabarty & Faircloth et al. 2017; left). That publication created some great opportunities to work with other scientists interested in using genomic fragments like ultraconserved elements in their phylogenetic studies of fishes.

Friday, September 15, 2017

Samaki! Samaki! Collecting Fishes in the Mangroves of Tanzania


I traveled to Tanzania this August to collect fishes for the 
Museum of Natural Science, and to help
A beautiful seine pull in low tide.
out folks from the LSU Department of Oceanography and Coastal Sciences (Drs. Mike Polito, Steve Midway and Victor Rivera-Monroy). Having spent the last year as a bureaucrat for the federal government (working as a Program Director for the National Science Foundation) I was eager for some adventure. A little over a year ago Dr. Michael Polito, Assistant Professor in Oceanography, mentioned he would be going to Tanzania and I asked, casually - but sincerely, if I could join him. It really wasn’t much more than that spontaneous self-invite, and the promise to help with vouchering and identifying fishes, that brought me to Tanzania.
       I must admit to being a bit nervous before the trip, there were a lot more unknowns than I am used to. It has been a long time since I went on a collecting trip where I wasn’t the lead, and where I was without other members of my own lab. I wanted to be sure not to get in the way of the research being conducting by Mike and his colleagues. I had also never collected in mainland Africa before; the closest I had ever been was Madagascar (which although close is very different). Perhaps the strangest thing about me going to this trip was the location within Tanzania. Most people interested in the fishes of the region would be headed straight to the famous East African Great Lakes – 85% of the fish landings from Tanzania are still from Lake Victoria. Ichthyologists interested in the marine fauna are more likely to go to Zanzibar (an island off the coast) – but since the Oceanography team was interested in studying mangroves, I would be studying the fishes of the mangroves. Knowing how few ichthyologists had ever collected in the area gave me high hopes that we might have the opportunity to discover new records and perhaps even new species.

The striking difference between low tide and high.



Team Samaki!
Beautiful shrimpfish collected by Mike Polito.
Although I am now a reasonably seasoned ichthyologist, I still don’t know all 40,000 species of fishes; and I knew next to nothing about the ichthyofauna of the region before the trip. Luckily, unlike me, the Oceanography folks like to be prepared. One of Mike’s students, Mario Hernandez, went to Tanzania last year and created a little summary slideshow of the fishes they encountered. Unfortunately for me, few of the fishes were vouchered from the previous expedition, which is one of the reasons I was going this year. Mario’s pictures had me salivating about what we might bring back to the LSUMNS Fish Collection. Unfortunately, the entire trip was nearly upended before we even got started.
 The original plan was to collect in a region called Rufiji – an area with high tides in a very remote area where we would be camping with little access to infrastructure. Unfortunately, some politically motivated problems arose: people were protesting police corruption resulting in some folks being killed. Even if we would likely be safe as foreigners, it would be impossible to get the boats and local help that we needed. The Oceanography team decided instead that they would return to an area they sampled previously: Pangani.
Pangani (specifically Kjongo Bay near the town of Kipumbwe) is a region across from the island of Zanzibar, and about seven hours north by car from the capital Dar es Salaam. Despite being remote as well, this area has quite a bit more infrastructure and creature comforts than Rufiji. In the end we were safe and had very agreeable accommodations, included three square meals a day. More importantly our hosts allowed us to spread dead fish specimens all over the place while we all took samples of otoliths, isotopes, DNA samples, and cores of mangrove mud.
We were traveling to Tanzania to allow the Oceanography team to better understand how the mangroves functioned in the larger ecosystem. Besides Mike and Mario there was Steve Midway and his student Matt Roberts filling out Team Samaki (‘samaki’ is Swahili for fish). There was also Team Mangrove led by Victor Rivera-Monroy and his lab who were taking core samples and other data to better understand the role of mangroves in general. Team Mangrove spent many hours a day out deep in the mangrove forest being tortured by insects and being cut by razor clams and other protruding organic weaponry. When they returned they spent many hours that could have been used for drinking cocktails to clean their equipment and organize their samples.
          The mangroves in Kjongo Bay have a tide that rises and sinks about three meters twice a day. Our boats could only go out while the tides were high enough to allow the boats in and out of the mangroves. Unfortunately, the best collecting time was near the lowest points of the tide when the boats would be stranded. There was always a race against the clock, and we were nearly always stuck somehow – either stuck waiting for the tide (to go up or down), or literally stuck in the mud. Our boats were often stranded when the tide went out. Sometimes we would chant, ‘samaki, samaki’ while rocking our vessel from side to side, trying to steer it into deeper waters.

At one site we suddenly hit a sand bank and the boat was stranded in a few inches of water, while we figured out what to do next I got stung in the temple by a bee, and then stung again on the face, as I swatting furiously Mario yelled out “bees!” and then another person yelled out while pushing us,  “jump into the water!”  We all dove into the shallow water but the bees kept stinging the back of our heads and necks – we swam to the other side of the riverbank to escape. When we looked back at the boat we could see hundreds of bees swarming it. We were each stung about a half dozen times. As we licked our wounds we decided to walk downriver to join another team while we waited for the tide to rise, and to free our boat to drift down river away from the bees.
      As luck would have it that other ‘bee-free site’ was remarkably diverse. We were seining different spots getting lots of different species. These included young grouper, snappers, but also species of a group I know well – the Leiognathidae (or ponyfishes). I had noticed that Mario had seen some of these ponyfishes in markets the previous year but I was still surprised to see ponyfishes in nearly every seine haul we made. I was surprised because adult ponyfishes can be collected nearly anywhere throughout the enormous Indian and Pacific oceans – but adults are bioluminescent and typically found at depths several hundred meters deep – what on Earth are juveniles doing in mangroves alongside mosquitofish and gobies? Part of what I hypothesize is happening is that ponyfishes spawn in shallow waters near the mangroves. Coastal Tanzania is known for its bioluminescencent bays; the light is caused by high concentrations of small glowing organisms. Perhaps ponyfishes ‘gets their glow’ from a bacterium that may be in high concentrations here? Only time, and a $500,000 grant from the National Science Foundation, will tell.

       Some of my days were spent sorting the fishes others were collecting. My job those days were to help with IDs for the project goals of the Oceanography team. It was sometimes hard not to think of the fish collections I curate whenever we got something new. It caused me physical pain and mental anguish to see some rare specimens being torn up for isotope analysis rather than being preserved as pristine specimen for our museum. I had to remember that these specimens may help the Oceanography team better understand how to save these mangroves – and who would want to get in the way of that? In the end I still brought back nearly 500 samples from about 50 species, most new to the collection, and perhaps new to any collections – stay tuned for more on that.
              It was certainly an interesting time to be in Tanzania – a new leader is pushing out 
foreign  interests, trying to cut down on corruption (which also is cutting into the shadow 
economy that benefits many impoverished people). Tourism to Tanzania has also gone down 
dramatically because of increased violence. Despite our efforts to stay safe by choosing Pangani 
over Rafiji we sometimes found ourselves just at the periphery of deadly violence. We began and 
ended our trip in the capital city of Dar es Salaam. And although Dar has traditionally been rather 
safe we heard of several reports of gun violence. Near the end of our trip, a noted elephant 
conservation biologist Wayne Lotter was murdered just a few blocks from a place we were 
visiting. We learned of how he was killed (followed in his taxi from the airport, shot while he sat 
beside his wife) from reading the cover of the New York Times the next day, and not from the local
 news. The news shocked our colleague Lindsey West who runs a local NGO called Seasense. 
Lindsey, who is British, has lived in Tanzania for many years and has been dealing with the 
increase in violence daily. She is extremely efficient and she masterfully arranged for local help 
for us from her many Tanzanian contacts and colleagues. Less shocking to Lindsey was our
report that a corpse had washed up on the beach in Kijongo with its hands and feet cut off 
and a plastic bag around the head. ‘Oh that’s just witchcraft stuff’ nothing we needed to worry 
about. We learned to listen carefully to Lindsey, if she said not to worry, we did not. 
She was ‘dada mkubwa’ big sister, after all.
Perplexing ponies.
               Over the 10 days in Tanzania I was able to see a great many things and learn a few choice Swahili words from the locals that were helping us out. The locals endowed us with some great nicknames too like, “Mzungu mfupi” (‘short white guy’) for Mike, and “Sharobaro” (‘pretty boy’) for Steve. Since Mario, was already ‘the Indian’ (‘Mhindi’), I didn’t really get a name that stuck. I wish I had learned more Swahili but I am thankful to our museum Business Manager, Tammie Jackson, who taught me a few key phrases before I left. If I had learned more from her I might have avoided some mix-ups while trying to purchase everything from full strength formalin (you want 37% of 37%?), to rum and coke (‘coke and lime?’) to ice coffee with milk (for which we were served ice and milk and no coffee). Despite the language barriers it was an amazing time. I thank my Oceanography colleagues Mike, Steve, Victor, (and their students) for letting me tag along on their trip – Asante sana